J3_6SGC_038
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 6SGC|1|54|C|2470, 6SGC|1|54|A|2472, 6SGC|1|54|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|A|2451
6SGC|1|54|G|2452
6SGC|1|54|A|2453
6SGC|1|54|U|2454
6SGC|1|54|G|2455
6SGC|1|54|G|2456
*
6SGC|1|54|C|2465
6SGC|1|54|G|2466
6SGC|1|54|U|2467
6SGC|1|54|U|2468
6SGC|1|54|C|2469
6SGC|1|54|C|2470
6SGC|1|54|G|2471
6SGC|1|54|A|2472
6SGC|1|54|A|2473
6SGC|1|54|G|2474
6SGC|1|54|G|2475
6SGC|1|54|G|2476
*
6SGC|1|54|C|2501
6SGC|1|54|A|2502
6SGC|1|54|G|2503
6SGC|1|54|C|2504
6SGC|1|54|C|2505
6SGC|1|54|G|2506
6SGC|1|54|A|2507
6SGC|1|54|U|2508
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A2
- Ribosomal protein L8
- Chain G2
- eL8
- Chain N2
- Ribosomal protein L15
- Chain X2
- Ribosomal_L23eN domain-containing protein
- Chain j2
- Ribosomal protein L37
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