J3_6SGC_041

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6SGC|1|54|U|4882, 6SGC|1|54|A|4938, 6SGC|1|54|C|4940, 6SGC|1|54|A|4943, 6SGC|1|54|C|4944, 6SGC|1|54|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|4749
6SGC|1|54|G|4750
6SGC|1|54|G|4751
6SGC|1|54|U|4752
6SGC|1|54|U|4753
6SGC|1|54|G|4754
*
6SGC|1|54|C|4879
6SGC|1|54|C|4880
6SGC|1|54|U|4881
6SGC|1|54|U|4882
6SGC|1|54|C|4883
*
6SGC|1|54|G|4936
6SGC|1|54|C|4937
6SGC|1|54|A|4938
6SGC|1|54|C|4939
6SGC|1|54|C|4940
6SGC|1|54|G|4941
6SGC|1|54|C|4942
6SGC|1|54|A|4943
6SGC|1|54|C|4944
6SGC|1|54|G|4945
6SGC|1|54|U|4946
6SGC|1|54|U|4947
6SGC|1|54|C|4948
6SGC|1|54|G|4949
6SGC|1|54|U|4950
6SGC|1|54|G|4951

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain M2

Ribosomal protein L14

Chain O2

uL13

Chain f2

eL33