J3_6SJ6_009

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUGAAA*UUUCUAACC*GAGACAG

Length

22 nucleotides

Bulged bases

6SJ6|1|A|C|2253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|U|2118
6SJ6|1|A|U|2119
6SJ6|1|A|G|2120
6SJ6|1|A|A|2121
6SJ6|1|A|A|2122
6SJ6|1|A|A|2123
*
6SJ6|1|A|U|2220
6SJ6|1|A|U|2221
6SJ6|1|A|U|2222
6SJ6|1|A|C|2223
6SJ6|1|A|U|2224
6SJ6|1|A|A|2225
6SJ6|1|A|A|2226
6SJ6|1|A|C|2227
6SJ6|1|A|C|2228
*
6SJ6|1|A|G|2249
6SJ6|1|A|A|2250
6SJ6|1|A|G|2251
6SJ6|1|A|A|2252
6SJ6|1|A|C|2253
6SJ6|1|A|A|2254
6SJ6|1|A|G|2255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain D

50S ribosomal protein L2