J3_6SJ6_010

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GCUC*GACUUAGUGAUCCG*CGCUCAAC

Length

26 nucleotides

Bulged bases

6SJ6|1|A|A|2415, 6SJ6|1|A|A|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|G|2309
6SJ6|1|A|C|2310
6SJ6|1|A|U|2311
6SJ6|1|A|C|2312
*
6SJ6|1|A|G|2410
6SJ6|1|A|A|2411
6SJ6|1|A|C|2412
6SJ6|1|A|U|2413
6SJ6|1|A|U|2414
6SJ6|1|A|A|2415
6SJ6|1|A|G|2416
6SJ6|1|A|U|2417
6SJ6|1|A|G|2418
6SJ6|1|A|A|2419
6SJ6|1|A|U|2420
6SJ6|1|A|C|2421
6SJ6|1|A|C|2422
6SJ6|1|A|G|2423
*
6SJ6|1|A|C|2447
6SJ6|1|A|G|2448
6SJ6|1|A|C|2449
6SJ6|1|A|U|2450
6SJ6|1|A|C|2451
6SJ6|1|A|A|2452
6SJ6|1|A|A|2453
6SJ6|1|A|C|2454

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L27