J3_6SJ6_017

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6SJ6|1|A|U|731, 6SJ6|1|A|G|837, 6SJ6|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SJ6_017 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2228

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|U|728
6SJ6|1|A|G|729
6SJ6|1|A|A|730
6SJ6|1|A|U|731
6SJ6|1|A|C|732
6SJ6|1|A|U|733
6SJ6|1|A|A|734
*
6SJ6|1|A|U|818
6SJ6|1|A|A|819
6SJ6|1|A|G|820
*
6SJ6|1|A|C|836
6SJ6|1|A|G|837
6SJ6|1|A|A|838
6SJ6|1|A|A|839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2