J3_6SKF_003

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GG*CGCCAGU(2MG)G*CGC

Length

14 nucleotides

Bulged bases

6SKF|1|Aa|U|669

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|618
6SKF|1|Aa|G|619
*
6SKF|1|Aa|C|663
6SKF|1|Aa|G|664
6SKF|1|Aa|C|665
6SKF|1|Aa|C|666
6SKF|1|Aa|A|667
6SKF|1|Aa|G|668
6SKF|1|Aa|U|669
6SKF|1|Aa|2MG|670
6SKF|1|Aa|G|671
*
6SKF|1|Aa|C|678
6SKF|1|Aa|G|679
6SKF|1|Aa|C|680

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ad

30S ribosomal protein S3Ae

Chain An

30S ribosomal protein S11

Chain Aq

30S ribosomal protein S15

Chain Bg

50S ribosomal protein L37Ae