J3_6SKF_006

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUUAAUU(OMG)G*CCGGGAACCUCAC*GGCUA

Length

27 nucleotides

Bulged bases

6SKF|1|Aa|G|925, 6SKF|1|Aa|G|927, 6SKF|1|Aa|A|929

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|U|906
6SKF|1|Aa|U|907
6SKF|1|Aa|U|908
6SKF|1|Aa|A|909
6SKF|1|Aa|A|910
6SKF|1|Aa|U|911
6SKF|1|Aa|U|912
6SKF|1|Aa|OMG|913
6SKF|1|Aa|G|914
*
6SKF|1|Aa|C|923
6SKF|1|Aa|C|924
6SKF|1|Aa|G|925
6SKF|1|Aa|G|926
6SKF|1|Aa|G|927
6SKF|1|Aa|A|928
6SKF|1|Aa|A|929
6SKF|1|Aa|C|930
6SKF|1|Aa|C|931
6SKF|1|Aa|U|932
6SKF|1|Aa|C|933
6SKF|1|Aa|A|934
6SKF|1|Aa|C|935
*
6SKF|1|Aa|G|1173
6SKF|1|Aa|G|1174
6SKF|1|Aa|C|1175
6SKF|1|Aa|U|1176
6SKF|1|Aa|A|1177

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Ap

30S ribosomal protein S13

Chain Ar

30S ribosomal protein S14 type Z

Chain Au

30S ribosomal protein S19