J3_6SKF_010

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6SKF|1|Aa|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|1189
6SKF|1|Aa|A|1190
6SKF|1|Aa|A|1191
6SKF|1|Aa|U|1192
6SKF|1|Aa|G|1193
*
6SKF|1|Aa|C|1248
6SKF|1|Aa|U|1249
6SKF|1|Aa|C|1250
6SKF|1|Aa|A|1251
6SKF|1|Aa|G|1252
6SKF|1|Aa|U|1253
6SKF|1|Aa|U|1254
6SKF|1|Aa|C|1255
*
6SKF|1|Aa|G|1286
6SKF|1|Aa|C|1287
6SKF|1|Aa|U|1288
6SKF|1|Aa|G|1289

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Ap

30S ribosomal protein S13

Chain Av

30S ribosomal protein S19e