J3_6SKF_011
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GG*CUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_011 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.11
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|G|39
6SKF|1|BA|G|40
*
6SKF|1|BA|C|513
6SKF|1|BA|U|514
6SKF|1|BA|G|515
6SKF|1|BA|A|516
6SKF|1|BA|A|517
6SKF|1|BA|A|518
6SKF|1|BA|A|519
6SKF|1|BA|G|520
*
6SKF|1|BA|C|546
6SKF|1|BA|C|547
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BV
- 50S ribosomal protein L22
- Chain BX
- 50S ribosomal protein L24
- Chain Bi
- 50S ribosomal protein L39e
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