J3_6SKF_014

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAUCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6SKF|1|BA|U|812, 6SKF|1|BA|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_014 not in the Motif Atlas

Homologous match to J3_4V9F_002

Geometric discrepancy: 0.1331

The information below is about J3_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

6SKF|1|BA|C|809
6SKF|1|BA|G|810
6SKF|1|BA|A|811
6SKF|1|BA|U|812
6SKF|1|BA|C|813
6SKF|1|BA|U|814
6SKF|1|BA|A|815
*
6SKF|1|BA|U|901
6SKF|1|BA|A|902
6SKF|1|BA|G|903
*
6SKF|1|BA|C|919
6SKF|1|BA|G|920
6SKF|1|BA|A|921
6SKF|1|BA|G|922

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e