J3_6SKF_020

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCC*GCCUAGCGAACCCC*G(OMG)(OMG)AUGAC

Length

25 nucleotides

Bulged bases

6SKF|1|BA|A|2532

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|2385
6SKF|1|BA|C|2386
6SKF|1|BA|C|2387
*
6SKF|1|BA|G|2490
6SKF|1|BA|C|2491
6SKF|1|BA|C|2492
6SKF|1|BA|U|2493
6SKF|1|BA|A|2494
6SKF|1|BA|G|2495
6SKF|1|BA|C|2496
6SKF|1|BA|G|2497
6SKF|1|BA|A|2498
6SKF|1|BA|A|2499
6SKF|1|BA|C|2500
6SKF|1|BA|C|2501
6SKF|1|BA|C|2502
6SKF|1|BA|C|2503
*
6SKF|1|BA|G|2526
6SKF|1|BA|OMG|2527
6SKF|1|BA|OMG|2528
6SKF|1|BA|A|2529
6SKF|1|BA|U|2530
6SKF|1|BA|G|2531
6SKF|1|BA|A|2532
6SKF|1|BA|C|2533

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BU

50S ribosomal protein L21e

Chain Bl

50S ribosomal protein L44e