J3_6SKF_021
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6SKF|1|BA|A|2437, 6SKF|1|BA|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKF_021 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.156
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|C|2398
6SKF|1|BA|U|2399
6SKF|1|BA|C|2400
*
6SKF|1|BA|G|2424
6SKF|1|BA|A|2425
6SKF|1|BA|G|2426
*
6SKF|1|BA|C|2435
6SKF|1|BA|A|2436
6SKF|1|BA|A|2437
6SKF|1|BA|A|2438
6SKF|1|BA|A|2439
6SKF|1|BA|G|2440
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L21e
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