J3_6SKF_025

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(4AC)G*CGA(A2M)ACC*(OMG)(OMG)G

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|4AC|41
6SKF|1|Aa|G|42
*
6SKF|1|Aa|C|349
6SKF|1|Aa|G|350
6SKF|1|Aa|A|351
6SKF|1|Aa|A2M|352
6SKF|1|Aa|A|353
6SKF|1|Aa|C|354
6SKF|1|Aa|C|355
*
6SKF|1|Aa|OMG|381
6SKF|1|Aa|OMG|382
6SKF|1|Aa|G|383

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ae

30S ribosomal protein S4

Chain Ao

30S ribosomal protein S12