J3_6SKF_029

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|887
6SKF|1|Aa|A|888
6SKF|1|Aa|A|889
6SKF|1|Aa|G|890
*
6SKF|1|Aa|C|1296
6SKF|1|Aa|U|1297
6SKF|1|Aa|A|1298
6SKF|1|Aa|G|1299
6SKF|1|Aa|U|1300
6SKF|1|Aa|A|1301
6SKF|1|Aa|C|1302
6SKF|1|Aa|C|1303
*
6SKF|1|Aa|G|1323
6SKF|1|Aa|C|1324
6SKF|1|Aa|G|1325
6SKF|1|Aa|A|1326
6SKF|1|Aa|A|1327
6SKF|1|Aa|U|1328
6SKF|1|Aa|A|1329
6SKF|1|Aa|C|1330
6SKF|1|Aa|G|1331

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Al

30S ribosomal protein S9

Chain Ay

30S ribosomal protein S28e