J3_6SKF_033

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGC*(OMG)GAC*GGAG

Length

11 nucleotides

Bulged bases

6SKF|1|Aa|A|1135

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|1060
6SKF|1|Aa|G|1061
6SKF|1|Aa|C|1062
*
6SKF|1|Aa|OMG|1107
6SKF|1|Aa|G|1108
6SKF|1|Aa|A|1109
6SKF|1|Aa|C|1110
*
6SKF|1|Aa|G|1133
6SKF|1|Aa|G|1134
6SKF|1|Aa|A|1135
6SKF|1|Aa|G|1136

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ai

30S ribosomal protein S7

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain At

30S ribosomal protein S17e