J3_6SKF_040

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCCAG*(OMC)GAGAAC*GUGCC

Length

17 nucleotides

Bulged bases

6SKF|1|BA|G|1753, 6SKF|1|BA|A|1754, 6SKF|1|BA|C|1768

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|1441
6SKF|1|BA|C|1442
6SKF|1|BA|C|1443
6SKF|1|BA|A|1444
6SKF|1|BA|G|1445
*
6SKF|1|BA|OMC|1750
6SKF|1|BA|G|1751
6SKF|1|BA|A|1752
6SKF|1|BA|G|1753
6SKF|1|BA|A|1754
6SKF|1|BA|A|1755
6SKF|1|BA|C|1756
*
6SKF|1|BA|G|1765
6SKF|1|BA|U|1766
6SKF|1|BA|G|1767
6SKF|1|BA|C|1768
6SKF|1|BA|C|1769

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Be

50S ribosomal protein L34e

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e