J3_6SKF_042

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKF_042 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0908

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6SKF|1|BA|U|1578
6SKF|1|BA|G|1579
6SKF|1|BA|A|1580
6SKF|1|BA|C|1581
6SKF|1|BA|G|1582
*
6SKF|1|BA|C|1709
6SKF|1|BA|C|1710
*
6SKF|1|BA|G|1714
6SKF|1|BA|A|1715
6SKF|1|BA|A|1716
6SKF|1|BA|A|1717
6SKF|1|BA|A|1718
6SKF|1|BA|G|1719

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Be

50S ribosomal protein L34e

Chain Bg

50S ribosomal protein L37Ae