J3_6SKF_043

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGCAAAAGCCGGCCUG*CC*GUGGC

Length

23 nucleotides

Bulged bases

6SKF|1|BA|A|2437, 6SKF|1|BA|A|2439, 6SKF|1|BA|U|2488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|2433
6SKF|1|BA|G|2434
6SKF|1|BA|C|2435
6SKF|1|BA|A|2436
6SKF|1|BA|A|2437
6SKF|1|BA|A|2438
6SKF|1|BA|A|2439
6SKF|1|BA|G|2440
6SKF|1|BA|C|2441
6SKF|1|BA|C|2442
6SKF|1|BA|G|2443
6SKF|1|BA|G|2444
6SKF|1|BA|C|2445
6SKF|1|BA|C|2446
6SKF|1|BA|U|2447
6SKF|1|BA|G|2448
*
6SKF|1|BA|C|2477
6SKF|1|BA|C|2478
*
6SKF|1|BA|G|2487
6SKF|1|BA|U|2488
6SKF|1|BA|G|2489
6SKF|1|BA|G|2490
6SKF|1|BA|C|2491

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L18

Chain BU

50S ribosomal protein L21e

Chain Bl

50S ribosomal protein L44e