J3_6SKG_014
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 6SKG|1|BA|U|812, 6SKG|1|BA|G|920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SKG_014 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.1344
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
6SKG|1|BA|C|809
6SKG|1|BA|G|810
6SKG|1|BA|A|811
6SKG|1|BA|U|812
6SKG|1|BA|C|813
6SKG|1|BA|U|814
6SKG|1|BA|A|815
*
6SKG|1|BA|U|901
6SKG|1|BA|A|902
6SKG|1|BA|G|903
*
6SKG|1|BA|C|919
6SKG|1|BA|G|920
6SKG|1|BA|A|921
6SKG|1|BA|G|922
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain BP
- 50S ribosomal protein L15e
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
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