J3_6SKG_016

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUAGG*CUG*UAAG

Length

13 nucleotides

Bulged bases

6SKG|1|BA|U|1436, 6SKG|1|BA|G|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_016 not in the Motif Atlas

Geometric match to J3_4V9F_006

Geometric discrepancy: 0.2356

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SKG|1|BA|C|1434
6SKG|1|BA|G|1435
6SKG|1|BA|U|1436
6SKG|1|BA|A|1437
6SKG|1|BA|G|1438
6SKG|1|BA|G|1439
*
6SKG|1|BA|C|1771
6SKG|1|BA|U|1772
6SKG|1|BA|G|1773
*
6SKG|1|BA|U|1785
6SKG|1|BA|A|1786
6SKG|1|BA|A|1787
6SKG|1|BA|G|1788

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e