J3_6SKG_019

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUG*CUAAC*GGAC(A2M)G

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_019 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1124

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6SKG|1|BA|U|2203
6SKG|1|BA|U|2204
6SKG|1|BA|G|2205
*
6SKG|1|BA|C|2308
6SKG|1|BA|U|2309
6SKG|1|BA|A|2310
6SKG|1|BA|A|2311
6SKG|1|BA|C|2312
*
6SKG|1|BA|G|2325
6SKG|1|BA|G|2326
6SKG|1|BA|A|2327
6SKG|1|BA|C|2328
6SKG|1|BA|A2M|2329
6SKG|1|BA|G|2330

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e