J3_6SKG_023

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GUUGAU*AACAG

Length

13 nucleotides

Bulged bases

6SKG|1|BA|U|2959, 6SKG|1|BA|A|2961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SKG_023 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.2207

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6SKG|1|BA|C|2940
6SKG|1|BA|C|2941
*
6SKG|1|BA|G|2957
6SKG|1|BA|U|2958
6SKG|1|BA|U|2959
6SKG|1|BA|G|2960
6SKG|1|BA|A|2961
6SKG|1|BA|U|2962
*
6SKG|1|BA|A|3016
6SKG|1|BA|A|3017
6SKG|1|BA|C|3018
6SKG|1|BA|A|3019
6SKG|1|BA|G|3020

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22

Chain Bc

50S ribosomal protein L31e