J3_6SNT_026
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_026 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1579
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SNT|1|2|U|1283
6SNT|1|2|C|1284
6SNT|1|2|U|1285
6SNT|1|2|U|1286
6SNT|1|2|A|1287
6SNT|1|2|G|1288
*
6SNT|1|2|C|1327
6SNT|1|2|G|1328
6SNT|1|2|A|1329
6SNT|1|2|G|1330
6SNT|1|2|A|1331
6SNT|1|2|C|1332
*
6SNT|1|2|G|1419
6SNT|1|2|C|1420
6SNT|1|2|A|1421
6SNT|1|2|A|1422
6SNT|1|2|U|1423
6SNT|1|2|A|1424
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain D
- 40S ribosomal protein S3
- Chain Q
- 40S ribosomal protein S16-A
- Chain R
- 40S ribosomal protein S17-B
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
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