J3_6SNT_027

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SNT_027 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0958

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SNT|1|2|U|1293
6SNT|1|2|G|1294
*
6SNT|1|2|U|1303
6SNT|1|2|G|1304
6SNT|1|2|U|1305
6SNT|1|2|C|1306
*
6SNT|1|2|G|1318
6SNT|1|2|A|1319
6SNT|1|2|U|1320
6SNT|1|2|A|1321
6SNT|1|2|A|1322

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-B