J3_6SNT_033
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6SNT|1|1|U|343, 6SNT|1|1|A|351, 6SNT|1|3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0537
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6SNT|1|1|C|340
6SNT|1|1|G|341
6SNT|1|1|A|342
6SNT|1|1|U|343
6SNT|1|1|A|344
6SNT|1|1|G|345
6SNT|1|1|C|346
6SNT|1|1|G|347
6SNT|1|1|A|348
6SNT|1|1|A|349
6SNT|1|1|C|350
6SNT|1|1|A|351
6SNT|1|1|A|352
6SNT|1|1|G|353
6SNT|1|1|U|354
6SNT|1|1|A|355
6SNT|1|1|C|356
*
6SNT|1|1|G|363
6SNT|1|1|G|364
6SNT|1|1|A|365
6SNT|1|1|A|366
6SNT|1|1|A|367
6SNT|1|1|G|368
*
6SNT|1|3|C|21
6SNT|1|3|U|22
6SNT|1|3|U|23
6SNT|1|3|G|24
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain ar
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L4-A
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