J3_6SNT_035
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CCACCAU
- Length
- 24 nucleotides
- Bulged bases
- 6SNT|1|1|C|1556, 6SNT|1|1|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|A|1537
6SNT|1|1|G|1538
6SNT|1|1|A|1539
6SNT|1|1|U|1540
6SNT|1|1|G|1541
6SNT|1|1|G|1542
*
6SNT|1|1|C|1551
6SNT|1|1|G|1552
6SNT|1|1|U|1553
6SNT|1|1|U|1554
6SNT|1|1|U|1555
6SNT|1|1|C|1556
6SNT|1|1|A|1557
6SNT|1|1|A|1558
6SNT|1|1|A|1559
6SNT|1|1|G|1560
6SNT|1|1|G|1561
*
6SNT|1|1|C|1578
6SNT|1|1|C|1579
6SNT|1|1|A|1580
6SNT|1|1|C|1581
6SNT|1|1|C|1582
6SNT|1|1|A|1583
6SNT|1|1|U|1584
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain ag
- 60S ribosomal protein L37-A
- Chain as
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L2-A
- Chain n
- 60S ribosomal protein L8-A
- Chain t
- 60S ribosomal protein L15-A
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