J3_6SNT_038
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6SNT|1|1|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SNT_038 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0587
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|1|G|2651
6SNT|1|1|U|2652
6SNT|1|1|C|2653
*
6SNT|1|1|G|2754
6SNT|1|1|C|2755
6SNT|1|1|C|2756
6SNT|1|1|U|2757
6SNT|1|1|A|2758
6SNT|1|1|U|2759
6SNT|1|1|C|2760
6SNT|1|1|G|2761
6SNT|1|1|A|2762
6SNT|1|1|U|2763
6SNT|1|1|C|2764
6SNT|1|1|C|2765
*
6SNT|1|1|G|2793
6SNT|1|1|G|2794
6SNT|1|1|U|2795
6SNT|1|1|G|2796
6SNT|1|1|C|2797
6SNT|1|1|C|2798
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ab
- 60S ribosomal protein L42-A
- Chain ap
- 60S ribosomal protein L28
- Chain w
- 60S ribosomal protein L18-A
- Chain z
- 60S ribosomal protein L21-A
Coloring options: