J3_6SNT_040

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6SNT|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SNT_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0731

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6SNT|1|2|A|41
6SNT|1|2|G|42
6SNT|1|2|A|43
6SNT|1|2|U|44
6SNT|1|2|U|45
6SNT|1|2|A|46
6SNT|1|2|A|47
6SNT|1|2|G|48
*
6SNT|1|2|C|431
6SNT|1|2|G|432
6SNT|1|2|C|433
6SNT|1|2|G|434
6SNT|1|2|C|435
6SNT|1|2|A|436
6SNT|1|2|A|437
6SNT|1|2|A|438
6SNT|1|2|U|439
*
6SNT|1|2|A|464
6SNT|1|2|G|465
6SNT|1|2|U|466

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A