J3_6SPB_003

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAUCUA*UCG*CAAG

Length

14 nucleotides

Bulged bases

6SPB|1|A|U|676, 6SPB|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPB_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0943

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6SPB|1|A|C|673
6SPB|1|A|G|674
6SPB|1|A|A|675
6SPB|1|A|U|676
6SPB|1|A|C|677
6SPB|1|A|U|678
6SPB|1|A|A|679
*
6SPB|1|A|U|763
6SPB|1|A|C|764
6SPB|1|A|G|765
*
6SPB|1|A|C|781
6SPB|1|A|A|782
6SPB|1|A|A|783
6SPB|1|A|G|784

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain C

50S ribosomal protein L2