J3_6SPB_006

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6SPB|1|A|C|1597, 6SPB|1|A|A|1599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPB_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3977

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6SPB|1|A|C|1293
6SPB|1|A|A|1294
6SPB|1|A|A|1295
6SPB|1|A|G|1296
*
6SPB|1|A|C|1595
6SPB|1|A|C|1596
6SPB|1|A|C|1597
6SPB|1|A|A|1598
6SPB|1|A|A|1599
6SPB|1|A|A|1600
6SPB|1|A|C|1601
*
6SPB|1|A|G|1610
6SPB|1|A|U|1611
6SPB|1|A|G|1612

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34