J3_6SPB_007

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCGGUUC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPB_007 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.5697

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6SPB|1|A|U|1331
6SPB|1|A|C|1332
6SPB|1|A|G|1333
6SPB|1|A|G|1334
6SPB|1|A|U|1335
6SPB|1|A|U|1336
6SPB|1|A|C|1337
*
6SPB|1|A|G|1368
6SPB|1|A|G|1369
6SPB|1|A|A|1370
6SPB|1|A|A|1371
6SPB|1|A|A|1372
*
6SPB|1|A|U|1389
6SPB|1|A|A|1390

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23