J3_6SPB_016

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAC*GGCCAUAGUG*CGUAC

Length

20 nucleotides

Bulged bases

6SPB|1|A|U|315, 6SPB|1|A|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPB_016 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.5038

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6SPB|1|A|G|291
6SPB|1|A|G|292
6SPB|1|A|A|293
6SPB|1|A|A|294
6SPB|1|A|C|295
*
6SPB|1|A|G|310
6SPB|1|A|G|311
6SPB|1|A|C|312
6SPB|1|A|C|313
6SPB|1|A|A|314
6SPB|1|A|U|315
6SPB|1|A|A|316
6SPB|1|A|G|317
6SPB|1|A|U|318
6SPB|1|A|G|319
*
6SPB|1|A|C|331
6SPB|1|A|G|332
6SPB|1|A|U|333
6SPB|1|A|A|334
6SPB|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24