J3_6SPD_016

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCGGUUC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPD_016 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.5842

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6SPD|1|A|U|1331
6SPD|1|A|C|1332
6SPD|1|A|G|1333
6SPD|1|A|G|1334
6SPD|1|A|U|1335
6SPD|1|A|U|1336
6SPD|1|A|C|1337
*
6SPD|1|A|G|1368
6SPD|1|A|G|1369
6SPD|1|A|A|1370
6SPD|1|A|A|1371
6SPD|1|A|A|1372
*
6SPD|1|A|U|1389
6SPD|1|A|A|1390

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23