J3_6SPE_010
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 6SPE|1|a|U|1177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPE_010 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1508
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SPE|1|a|U|1110
6SPE|1|a|G|1111
6SPE|1|a|U|1112
*
6SPE|1|a|A|1149
6SPE|1|a|G|1150
6SPE|1|a|A|1151
6SPE|1|a|C|1152
6SPE|1|a|U|1153
6SPE|1|a|G|1154
6SPE|1|a|C|1155
*
6SPE|1|a|G|1169
6SPE|1|a|A|1170
6SPE|1|a|G|1171
6SPE|1|a|G|1172
6SPE|1|a|A|1173
6SPE|1|a|A|1174
6SPE|1|a|G|1175
6SPE|1|a|G|1176
6SPE|1|a|U|1177
6SPE|1|a|G|1178
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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