J3_6SPE_013
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*CUAGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- 6SPE|1|a|A|647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPE_013 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1364
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SPE|1|a|U|580
6SPE|1|a|G|581
6SPE|1|a|G|582
*
6SPE|1|a|C|645
6SPE|1|a|U|646
6SPE|1|a|A|647
6SPE|1|a|G|648
6SPE|1|a|A|649
*
6SPE|1|a|U|745
6SPE|1|a|G|746
6SPE|1|a|A|747
6SPE|1|a|C|748
6SPE|1|a|A|749
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
Coloring options: