J3_6SPE_023
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6SPE|1|a|A|969, 6SPE|1|a|G|970, 6SPE|1|a|A|972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPE_023 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1325
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SPE|1|a|U|949
6SPE|1|a|U|950
6SPE|1|a|U|951
6SPE|1|a|A|952
6SPE|1|a|A|953
6SPE|1|a|U|954
6SPE|1|a|U|955
6SPE|1|a|C|956
*
6SPE|1|a|G|967
6SPE|1|a|A|968
6SPE|1|a|A|969
6SPE|1|a|G|970
6SPE|1|a|A|971
6SPE|1|a|A|972
6SPE|1|a|C|973
6SPE|1|a|C|974
6SPE|1|a|U|975
6SPE|1|a|U|976
6SPE|1|a|A|977
6SPE|1|a|C|978
*
6SPE|1|a|G|1215
6SPE|1|a|G|1216
6SPE|1|a|C|1217
6SPE|1|a|U|1218
6SPE|1|a|A|1219
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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