J3_6SPF_004

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPF_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0682

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6SPF|1|A|C|688
6SPF|1|A|A|689
6SPF|1|A|G|690
*
6SPF|1|A|C|722
6SPF|1|A|G|723
6SPF|1|A|A|724
6SPF|1|A|A|725
6SPF|1|A|C|726
*
6SPF|1|A|G|750
6SPF|1|A|A|751
6SPF|1|A|U|752
6SPF|1|A|G|753

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2