J3_6SPF_009
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6SPF|1|A|A|2505, 6SPF|1|A|U|2506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPF_009 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.086
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SPF|1|A|C|2504
6SPF|1|A|A|2505
6SPF|1|A|U|2506
6SPF|1|A|C|2507
*
6SPF|1|A|G|2532
6SPF|1|A|U|2533
6SPF|1|A|A|2534
*
6SPF|1|A|U|2548
6SPF|1|A|U|2549
6SPF|1|A|U|2550
6SPF|1|A|A|2551
6SPF|1|A|A|2552
6SPF|1|A|A|2553
6SPF|1|A|G|2554
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
Coloring options: