J3_6SPF_015

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUAGC*GCGCAG*CGAUAAG

Length

18 nucleotides

Bulged bases

6SPF|1|a|U|865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|C|820
6SPF|1|a|U|821
6SPF|1|a|A|822
6SPF|1|a|G|823
6SPF|1|a|C|824
*
6SPF|1|a|G|850
6SPF|1|a|C|851
6SPF|1|a|G|852
6SPF|1|a|C|853
6SPF|1|a|A|854
6SPF|1|a|G|855
*
6SPF|1|a|C|862
6SPF|1|a|G|863
6SPF|1|a|A|864
6SPF|1|a|U|865
6SPF|1|a|A|866
6SPF|1|a|A|867
6SPF|1|a|G|868

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8

Chain u

30S ribosomal protein S21