J3_6SPF_020
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGUCUUAAUAGGGCGUUUAG
- Length
- 31 nucleotides
- Bulged bases
- 6SPF|1|A|U|635, 6SPF|1|A|U|643, 6SPF|1|A|U|644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|A|C|591
6SPF|1|A|A|592
6SPF|1|A|A|593
6SPF|1|A|G|594
*
6SPF|1|A|C|614
6SPF|1|A|G|615
6SPF|1|A|U|616
6SPF|1|A|A|617
6SPF|1|A|G|618
*
6SPF|1|A|C|625
6SPF|1|A|G|626
6SPF|1|A|A|627
6SPF|1|A|G|628
6SPF|1|A|U|629
6SPF|1|A|C|630
6SPF|1|A|U|631
6SPF|1|A|U|632
6SPF|1|A|A|633
6SPF|1|A|A|634
6SPF|1|A|U|635
6SPF|1|A|A|636
6SPF|1|A|G|637
6SPF|1|A|G|638
6SPF|1|A|G|639
6SPF|1|A|C|640
6SPF|1|A|G|641
6SPF|1|A|U|642
6SPF|1|A|U|643
6SPF|1|A|U|644
6SPF|1|A|A|645
6SPF|1|A|G|646
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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