J3_6SPF_025
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUCAUAG*CGCCGAUGGUAG*UGAGAGUAGGUCAU
- Length
- 33 nucleotides
- Bulged bases
- 6SPF|1|B|A|13, 6SPF|1|B|U|14, 6SPF|1|B|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|B|A|10
6SPF|1|B|U|11
6SPF|1|B|C|12
6SPF|1|B|A|13
6SPF|1|B|U|14
6SPF|1|B|A|15
6SPF|1|B|G|16
*
6SPF|1|B|C|68
6SPF|1|B|G|69
6SPF|1|B|C|70
6SPF|1|B|C|71
6SPF|1|B|G|72
6SPF|1|B|A|73
6SPF|1|B|U|74
6SPF|1|B|G|75
6SPF|1|B|G|76
6SPF|1|B|U|77
6SPF|1|B|A|78
6SPF|1|B|G|79
*
6SPF|1|B|U|97
6SPF|1|B|G|98
6SPF|1|B|A|99
6SPF|1|B|G|100
6SPF|1|B|A|101
6SPF|1|B|G|102
6SPF|1|B|U|103
6SPF|1|B|A|104
6SPF|1|B|G|105
6SPF|1|B|G|106
6SPF|1|B|U|107
6SPF|1|B|C|108
6SPF|1|B|A|109
6SPF|1|B|U|110
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
Coloring options: