J3_6SPG_003
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CGAUCUA*UCG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 6SPG|1|A|U|676, 6SPG|1|A|A|782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_003 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1184
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SPG|1|A|C|673
6SPG|1|A|G|674
6SPG|1|A|A|675
6SPG|1|A|U|676
6SPG|1|A|C|677
6SPG|1|A|U|678
6SPG|1|A|A|679
*
6SPG|1|A|U|763
6SPG|1|A|C|764
6SPG|1|A|G|765
*
6SPG|1|A|C|781
6SPG|1|A|A|782
6SPG|1|A|A|783
6SPG|1|A|G|784
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: