J3_6SPG_004

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SPG_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0994

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6SPG|1|A|C|688
6SPG|1|A|A|689
6SPG|1|A|G|690
*
6SPG|1|A|C|722
6SPG|1|A|G|723
6SPG|1|A|A|724
6SPG|1|A|A|725
6SPG|1|A|C|726
*
6SPG|1|A|G|750
6SPG|1|A|A|751
6SPG|1|A|U|752
6SPG|1|A|G|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2