J3_6SPG_012

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CC*GUUGAU*AAUGG

Length

13 nucleotides

Bulged bases

6SPG|1|A|U|2820, 6SPG|1|A|A|2822, 6SPG|1|A|U|2871, 6SPG|1|A|G|2872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|C|2801
6SPG|1|A|C|2802
*
6SPG|1|A|G|2818
6SPG|1|A|U|2819
6SPG|1|A|U|2820
6SPG|1|A|G|2821
6SPG|1|A|A|2822
6SPG|1|A|U|2823
*
6SPG|1|A|A|2869
6SPG|1|A|A|2870
6SPG|1|A|U|2871
6SPG|1|A|G|2872
6SPG|1|A|G|2873

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17