J3_6SPG_013
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AUCAUAG*CG*UCAU
- Length
- 13 nucleotides
- Bulged bases
- 6SPG|1|B|U|14, 6SPG|1|B|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SPG_013 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3239
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SPG|1|B|A|10
6SPG|1|B|U|11
6SPG|1|B|C|12
6SPG|1|B|A|13
6SPG|1|B|U|14
6SPG|1|B|A|15
6SPG|1|B|G|16
*
6SPG|1|B|C|68
6SPG|1|B|G|69
*
6SPG|1|B|U|107
6SPG|1|B|C|108
6SPG|1|B|A|109
6SPG|1|B|U|110
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
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