J3_6SV4_010
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUUAG*CGAGACC*GGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- 6SV4|1|2|U|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|2|U|1283
6SV4|1|2|C|1284
6SV4|1|2|U|1285
6SV4|1|2|U|1286
6SV4|1|2|A|1287
6SV4|1|2|G|1288
*
6SV4|1|2|C|1327
6SV4|1|2|G|1328
6SV4|1|2|A|1329
6SV4|1|2|G|1330
6SV4|1|2|A|1331
6SV4|1|2|C|1332
6SV4|1|2|C|1333
*
6SV4|1|2|G|1418
6SV4|1|2|G|1419
6SV4|1|2|C|1420
6SV4|1|2|A|1421
6SV4|1|2|A|1422
6SV4|1|2|U|1423
6SV4|1|2|A|1424
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S16-A
- Chain G
- 40S ribosomal protein S17-B
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
- Chain R
- 40S ribosomal protein S2
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