J3_6SV4_014

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_014 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.146

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|2b|A|41
6SV4|1|2b|G|42
*
6SV4|1|2b|C|433
6SV4|1|2b|G|434
6SV4|1|2b|C|435
6SV4|1|2b|A|436
6SV4|1|2b|A|437
6SV4|1|2b|A|438
6SV4|1|2b|U|439
*
6SV4|1|2b|A|464
6SV4|1|2b|G|465
6SV4|1|2b|U|466

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain cb

40S ribosomal protein S23-A