J3_6SV4_016

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_016 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.1795

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|2b|A|760
6SV4|1|2b|G|761
6SV4|1|2b|A|762
6SV4|1|2b|G|763
*
6SV4|1|2b|C|773
6SV4|1|2b|A|774
6SV4|1|2b|G|775
*
6SV4|1|2b|U|785
6SV4|1|2b|C|786
6SV4|1|2b|G|787
6SV4|1|2b|A|788
6SV4|1|2b|A|789
6SV4|1|2b|U|790

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Wb

40S ribosomal protein S9-A

Chain db

40S ribosomal protein S24-A