J3_6SV4_021
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6SV4|1|2b|G|1199, 6SV4|1|2b|G|1201, 6SV4|1|2b|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_021 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.195
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SV4|1|2b|C|1180
6SV4|1|2b|U|1181
6SV4|1|2b|U|1182
6SV4|1|2b|A|1183
6SV4|1|2b|A|1184
6SV4|1|2b|U|1185
6SV4|1|2b|U|1186
6SV4|1|2b|U|1187
*
6SV4|1|2b|G|1198
6SV4|1|2b|G|1199
6SV4|1|2b|G|1200
6SV4|1|2b|G|1201
6SV4|1|2b|A|1202
6SV4|1|2b|A|1203
6SV4|1|2b|A|1204
6SV4|1|2b|C|1205
6SV4|1|2b|U|1206
6SV4|1|2b|C|1207
6SV4|1|2b|A|1208
6SV4|1|2b|C|1209
*
6SV4|1|2b|G|1454
6SV4|1|2b|G|1455
6SV4|1|2b|C|1456
6SV4|1|2b|C|1457
6SV4|1|2b|G|1458
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Eb
- 40S ribosomal protein S15
- Chain Hb
- 40S ribosomal protein S18-A
- Chain Jb
- 40S ribosomal protein S20
- Chain Mb
- 40S ribosomal protein S29-A
- Chain Nb
- Ubiquitin-40S ribosomal protein S31
- Chain nb
- Transfer RNA; tRNA
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