J3_6SV4_036

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*UUGUC*GAUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|U|1293
6SV4|1|2c|G|1294
6SV4|1|2c|G|1295
*
6SV4|1|2c|U|1302
6SV4|1|2c|U|1303
6SV4|1|2c|G|1304
6SV4|1|2c|U|1305
6SV4|1|2c|C|1306
*
6SV4|1|2c|G|1318
6SV4|1|2c|A|1319
6SV4|1|2c|U|1320
6SV4|1|2c|A|1321
6SV4|1|2c|A|1322

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Gc

40S ribosomal protein S17-B

Chain Pc

40S ribosomal protein S0-A

Chain Rc

40S ribosomal protein S2

Chain ac

40S ribosomal protein S21-A